Apply patch by Tomas Kalibera to support updated rtools to build with newer ProtoBuf releases on windows
Package now builds with ProtoBuf >= 22.x thanks to Matteo Gianella (#93 addressing #92).
An Alpine 3.19-based workflow was added to test this in continuous integration thanks to a suggestion by Sebastian Meyer.
A large number of old-style .Call were updated (#96).
Several packaging, dcoumentation and testing items were updated.
Two function prototype were updated for clang-15.
GitHub Actions were updated to checkout version 3.
One more http:// URL was updated to https://
The package compilation is now done with C++17 as the Protocol
Buffer headers require it (and clang-15 nags otherwise).
Small cleanups to repository
Raise minimum Protocol Buffers version to 3.3 (closes #83)
Update package version display, added to startup message
Add missing explicit std:: on seven string
instances in one file (closes #89)
Support string_view in FindMethodByName() (Adam
Cozzette in #72).
CI use was updated first at Travis, later at GitHub and now uses r-ci (Dirk in #74 and (parts of) #76).
The (to the best of our knowledge) unused minimal RPC mechanism has been removed, retiring one method and one class as well as the import of the RCurl package (Dirk in #76).
The toJSON() method supports two (upstream) formatting
toggles (Vitali Spinu in #79 with minor edit by Dirk).
Windows UCRT builds are now supported (Jeroen in #81, Dirk and Tomas Kalibera in #82).
Condition use of ByteSizeLong() on building with ProtoBuf
3.6.0 or later (Dirk in #71 fixing #70).
The JSON unit tests are skipped if ProtoBuf 2.* is used (Dirk, also #71).
The configure script now extracts the version from the
DESCRIPTION file (Dirk, also #71).
Added support for parsing and printing JSON (Siddhartha Bagaria in #68 closing wishlist #61).
Switched ByteSize() to ByteSizeLong() to appease
clang (Dirk).
Repeated Message and Group objects are now returned correctly (Dirk in #64 fixing #62).
The unit tests are now run by tinytest (Dirk in #65).
The vignettes are now included pre-made (Dirk in #67).
An all.equal.Message method was added to avoid a
fallback to the generic (Jarod Meng in #54 fixing #53)
Recursive fields now handled by identical() (Jarod Meng
in #57 fixing #56)
Update Windows build infrastructure (Jeroen)
The configure setup is more robust with respect to the
C++ setup (CRAN request).
POSIXlt elements are now properly serialized too
(Jeffrey Shen in #48 and #50 fixing #47)
Added two Dockerfiles for continuous integration and use; see this url for more.
Recursive serialization of sublists returning themselves is now recognised (Jeffrey Shen in #38 fixing #37)
New function readProtoFiles2 to be consistent with
protoc (Siddhartha Bagaria in #40 fixing #39)
Update Windows binary library used (Maciej Lach and Jeroen Ooms in #42 and follow-up commits)
New unit tests for new functionality (Siddhartha Bagaria in #45)
The RProtoBuf-intro and RProtoBuf-quickref
vignettes were converted to Rmarkdown using the templates and style
file from the pinp package.
A few minor internal upgrades
More careful operation in deserializer checking for a valid class attribute (Jeffey Shen in #29 fixing #28)
At the request of CRAN, correct one .Call() argument to
PACKAGE=; update routine registration accordingly
A new file init.c was added with calls to
R_registerRoutines() and R_useDynamicSymbols()
Symbol registration is enabled in useDynLib
Several missing PACKAGE= arguments were added to
the corresponding .Call invocations
Two (internal) C++ functions were renamed with suffix
_cpp to disambiguate them from R functions with the same name
All of above were part of #26
Some editing corrections were made to the introductory vignette (David Kretch in #25)
The 'configure.ac' file was updated, and renamed from the older converntion 'configure.in', along with 'src/Makevars'. (PR #24 fixing #23)
At the request of CRAN, two documentation instances referring to the Omegehat repository were updated to https://omegahat.net/
Support for serializing zero-length objects was added (PR #18 addressing #13)
S4 objects are natively encoded (also PR #18)
The vignette based on the JSS paper no longer uses a macro available only with the R-devel version of jss.cls, and hence builds on all R versions
Support for version 3 of the Protcol Buffers API
Added 'syntax = "proto2";' to all proto files (PR #17)
Updated Travis CI script to test against both versions 2 and 3 using custom-built .deb packages of version 3 (PR #16)
Improved build system with support for custom CXXFLAGS (Craig Radcliffe in PR #15)
New vignette based on JSS publication (v71 i02)
Some documentation enhancements were made, as well as other minor cleanups to file modes and operations
Unit-test vignette no longer writes to /tmp per CRAN
request
The new Windows toolchain (based on g++ 4.9.*) is supported
Declare additional imports from methods in NAMESPACE.
Travis CI tests now run faster as all CRAN dependencies are installed as binaries.
The tools/winlibs.R script now tests for R (< 3.3.0)
before calling the (soon-to-be phased out) setInternet2() function.
Several small edits were made to DESCRIPTION to clarify
library dependencies, provide additonal references and conform to
now-current R packaging standards.
Address changes suggested by anonymous reviewers for our Journal of Statistical Software submission.
Make Descriptor and EnumDescriptor objects subsettable with
"[[".
Add length() method for Descriptor objects.
Add names() method for Message,
Descriptor, and EnumDescriptor objects.
Clarify order of returned list for descriptor objects in
as.list documentation.
Correct the definition of as.list for EnumDescriptors to
return a proper list instead of a named vector.
Update the default print methods to use
cat() with fill=TRUE instead of show() to eliminate the confusing
[1] since the classes in RProtoBuf are not vectorized.
Add support for serializing function, language, and
environment objects by falling back to R's native serialization
with serialize_pb and unserialize_pb to make it
easy to serialize into a Protocol Buffer all of the more than 100
datasets which come with R.
Use normalizePath instead of creating a temporary
file with file.create when getting absolute path names.
Add unit tests for all of the above.
Document and add a test for the deprecated group functionality.
Add a CITATION file pointing to the arXiv.org preprint.
Fix a bug in the show method for EnumDescriptor
types.
Import all top-level enums from imported .proto files.
Removed duplicate enum value type from the unit tests that caused problems with the most recent libprotobuf-2.5. (without option allow_alias).
Changes to support CRAN builds for MS Windows.
Added functions serialize_pb, unserialize_pb,
and can_serialize_pb plus documentation from Jeroen Ooms
RProtoBufUtils package.
New dir inst/python with some Python examples.
Added Jeroen Ooms as author.
Vignettes have been converted to the R 3.0.0 or later use of
external vignette builders, no longer need a Makefile
Added missing methods to dollar completion list for Message, Descriptor, EnumValueDescriptor, and FileDescriptor classes.
Add missing export for .DollarNames EnumValueDescriptor
to allow completion on that class.
Add more than 15 additional pages to the main Intro vignette documenting better all of the S4 classes implemented by RProtoBuf, updating the type mapping tables to take into account 64-bit support, and documenting advanced features such as Extensions.
Added better error checking in EnumDescriptors to catch the case when wrong types are provided.
Updated the FileDescriptor name() method to accept a boolean
for full paths just like the generic name() method.
Correct a bug that incorrectly dispatched as.character() when
as.list() was called on Descriptor objects.
Update FileDescriptor $ dispatch to work properly for
the names of fields defined in the FileDescriptor, instead of
just returning NULL even for types returned by $
completion.
Added a reservation for extension fields in the example tutorial.Person schema.
Support setting int32 fields with character representations
and raise an R-level stop() error if the provided string can
not be parsed as a 32-bit integer, rather than crashing the R
instance.
Update the project TODO file.
Add better documentation and tests for all of the above.
Corrected the handling of uint32 and fixed32 types in protocol buffers to ensure that they work with numbers as large as 2^32 - 1, which is larger than an integer can hold in R since R does not have an unsigned integer class. These values are stored as doubles internally now to avoid losing precision.
Added unit tests to verify behavior of RProtoBuf with extreme values for uint32 types.
Removed old exception handling code and instead rely on the more modern Rcpp::stop method maintained in Rcpp.
Add better error messages when setting a repeated field of messages to inform the user which element index was of the wrong type and what the expected type was.
Add an optional 'partial' argument to readASCII allowing uninitialized message fragments to be read in.
(internal) Added const qualifiers in more places throughout the C++ code for type safety.
(internal) Standardize coding conventions of the C++ files and run them through clang-format for consistency. A STYLE file has been submitted to R-Forge with details about the coding standards and how they are enforced with Emacs and clang-format.
Applied changes suggested by Kevin Ushey to the S4
class handling to support both the currently released Rcpp as
well as the currently pending next version.
Fixed a bug that erroneously prevented users from setting raw byte fields in protocol buffers under certain circumstances.
Give a user friendly error message when seting an extension to a message of the wrong type instead of causing a C++ check failure that terminates the Rsession.
Change object table lookup slightly to allow users to use the
<<- operator in code using RProtoBuf without hitting a
stop() error in the lookup routine.
Add missing enum_type method and improve show method for
EnumValueDescriptors.
Improve documentation and tests for all of the above.
Rewrote tests/ script calling RUnit tests
Added support for setting and getting 64-bit integer types as character strings of decimal integers to work around R's lack of native 64-bit integer types.
Added better error handling, documentation, and tests to the extensions support (getExtension and setExtension).
Add support to P for returning extension descriptors.
Improved error messages to include field names when invalid fields are specified to protocol buffer messages with new, update, etc.
Improved configure to detect and pass -std=c++0x if it is available to enable long long 64-bit integer support in Rcpp.
Improved configure in the case when pkg-config is not available or does not know about the google protocol buffer includes.
Replaced newly deprecated Rcpp macros with a simplified macro functionality to avoid warnings on the latest development version of Rcpp.
Added support for Protocol Buffer extensions through the new getExtension and setExtension methods for Message objects, and added top-level extensions to the descriptor pool.
Added more user-friendly show() methods for Messages,
Descriptors, and other RProtoBuf objects. A common source of
confusion on the mailing lists is to confuse Messages and
Descriptors. The new show() methods succinctly display more
information about e.g. the number of set fields in a message to
make it a little clearer to users what type of object they are
working with.
Added has method for EnumDescriptor objects to test existance of a named constant in an enumeration, and fix a bug in the length method for these objects.
Added a number method for EnumValueDescriptor objects to return the number of a named enumeration constant directly.
Improved documentation and unit tests.
Applied several more patches by Murray to
correct '_' and '__' mismatches in wrapper calls
update a few manual pages for style, and add examples
fix a bug where NAs were silently treated as TRUE for logical/bool types
fix a bug that caused crashes when adding vectors to optional fields
fix bugs in readASCII that returned empty protocol buffers when the file or connection could not be opened
distinguish between non-existant and not-set fieldswith has() by returning NULL in the former case.
fix a bug that caused non-deterministic behavior when setting a repeated message field in a protobuf to a single Message.
add unit tests for all of the above.
Added Murray to Authors: field in DESCRIPTION
Removed old and unconvincing example on RProtoBuf for storage and serialization in an imagined HighFrequencyFinance context
Applied patches by Murray to
correctly deal with nested Protocol Buffer definitions, and also add new unit test for this
test a a protocol buffer for missing required fields before serializing it, also add a unit test
add a small stylistic fix and examples to the 'add.Rd' manual page
Moved inst/doc/ to vignettes/ per newer CRAN Policy
Applied several patches kindly supplied by Murray Stokely to
properly work with repeated strings
correct C++ function naming in a few instances
add an example of ascii export/import of messages
Suppport g++-4.7 and stricter #include file checking by adding unistd
Made small improvements to the startup code
Protect UINT64 and INT64 with '#ifdef RCPP_HAS_LONG_LONG' which itself is valid with either g++ <= 4.4, or newer versions if the -std=c++0x is used
The documentation Makefile now uses the $R_HOME environment variable
The documentation Makefile no longer calls clean in the all target
Applied two patches by Murray Stokely which
correct a typo preventing some functions from being called,
add bounds checking in call to google protobuf library,
add a new name method
add a tiny unit test for the above
add more graceful error handling
add support for import patterns other than .proto$,
add simple reading file that does not exist (exception) test
add simple repeated field unit test
Support for raw bytes added thanks to a patch by Koert Kuipers
Second release with numerous internal changes made possible by changes in Rcpp
Initial CRAN release